BtaEX6046157 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96205562-96208779:+
Coord C1 exon
chr11:96205562-96205634
Coord A exon
chr11:96206812-96207009
Coord C2 exon
chr11:96208282-96208779
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTGGTCTCGCTTAGGTT
3' ss Score
8.76
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGTTCTTCATGAACATATTCAGAGATTGTCTAAAGTAGTGACTGCAAATCACAGAGCTCTGCAGATACCAGAG
Seq A exon
GTTTATCTTAAGGAGGCACCGTGGCCCTCGGCACAGTCAGAAATCAGGACAATAAGTGCTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTGCTCCACGATCATGAACCTCCTGAGCCTGGCCAACGAGGACTCCGTCCCAGGGGCAGATGACTTCGTCCCTGTGCTGGTGTTTGTGTTGATCAAG
Seq C2 exon
GCAAATCCACCCTGTTTGCTGTCCACTGTTCAGTACATCAGTAGCTTTTATGCCAGCTGTCTGTCTGGAGAGGAGTCCTATTGGTGGATGCAGTTCACGGCGGCCGTGGAATTCATTAAGACTATCGATGACCGAAAGTGACCGAGACAAAGGCCCAGCAAGGCGGCGGACTGTTGGCAGGGCACACAGATCTCTCAGAAAACGTACCAGCTGCTTTGAAGGCTGAAGATTGTTTTTGTATAATATTGTACAGTGTTCAGACCTTTTAAAACAGATCTTTACTAAACAGATTAATGAGCTAACAAGCAGGTTCTCTTTTCTTTGGGTTCTTTTCCTTTCTGAGTTGCATATTTCATTAATTTCTTGTCCCCACATAGAGAATAGTACTGCAAAAAGGGACCACATTTTTCAGGTATTTTGAAATACAAAAAAAAACACAACCCAAATCTAGAAAATTCCTAGATCTCTGTTTATGGATACTCATTCTTTCTTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544-'32-33,'32-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0220413=VPS9=PU(56.3=87.9)
C2:
PF0220413=VPS9=PD(41.7=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTCTGCAGATACCAGA
R:
AGCCTTCAAAGCAGCTGGTAC
Band lengths:
246-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]