GgaEX1026085 @ galGal3
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10344445-10346902:+
Coord C1 exon
chr17:10344445-10344517
Coord A exon
chr17:10345363-10345560
Coord C2 exon
chr17:10346267-10346902
Length
198 bp
Sequences
Splice sites
3' ss Seq
GATGGGTTTCTTTCTCCTAGGTA
3' ss Score
9.34
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCCTTCATGAACACATACAGAGGTTATCTAAAGTGGTGACTGCAAACCACAAAGCACTTCAGATTCCTGAG
Seq A exon
GTATATCTCCGGGAGGCACCGTGGCCATCTGCACAGTCTGAAATCCGTACAATAAGCGCTTACAAAACCCCCCGAGACAAAGTGCAGTGTATCCTGCGAATGTGTTCAACCATTATGAACCTGCTTAGCCTGGCAAATGAAGATTCAGTACCTGGGGCAGATGATTTTGTTCCTGTTCTGGTCTTTGTTCTCATAAAG
Seq C2 exon
GCAAATCCACCTTGCTTGCTGTCCACTGTTCAGTACATAAGTAGTTTCTATGCCAACTGCTTATCTGGAGAAGAATCCTACTGGTGGATGCAGTTCACAGCAGCAGTTGAATTCATTAAAACTATTGATGATCGCAAGTAACTCAGACAGCACATATATGGGCAGACTGTTAGCAGAAGAGTCTGTAAGAATGTACAACAGCTGCAAAAGCTAAGAAGAGACTTTCCTTGTATAATATTGTACAGAATCGAGGCATTTTAAAACACACCTTTACTAATCAAATTAATTTAACAGGTTTTCCTCTTCTCTTTTGGTTGCGTTTTTCTCCCCTATAGATACTGGCACTGCAAAAGGGACCACAGTTTTCAGGTATTTTGGAATCTCAAAGCATACAGAAAAGTCTGTGGTTTTTCCACCACCCCTCTTACTCACGTGAATAATTCACTTCATTTCCAATGGAACACTGAAACAAGAAGAATCAGGGCAACCACTTAGTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0220413=VPS9=PU(56.3=87.9)
C2:
PF0220413=VPS9=PD(41.7=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACTGCAAACCACAAAGC
R:
GCTTTTGCAGCTGTTGTACAT
Band lengths:
248-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]