RnoEX0037737 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13753165-13755056:-
Coord C1 exon
chr3:13754984-13755056
Coord A exon
chr3:13753748-13753945
Coord C2 exon
chr3:13753165-13753503
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGCCATCCCGCTCAGGTC
3' ss Score
8.35
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTTCTGCATGAACACATCCAGAGATTATCTAAAGTAGTGACTGCAAACCACAGAGCTCTGCAGATCCCAGAG
Seq A exon
GTCTATCTTCGTGAGGCACCGTGGCCATCTGCACAGTCAGAAATCAGGACTATTAGTGCTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTGCTCCACTATCATGAACCTCCTGAGTCTGGCCAATGAGGACTCTGTCCCCGGGGCAGATGACTTTGTCCCCGTGTTGGTGTTTGTGTTGATAAAG
Seq C2 exon
GCAAACCCACCCTGCCTGCTGTCCACCGTGCAGTACATCAGCAGCTTCTATGCCAGCTGTCTGTCTGGAGAGGAGTCCTACTGGTGGATGCAGTTCACTGCGGCCGTGGAGTTTATTAAAACCATCGATGACAGAAAGTGACCAAGACCAGGCCCACCAAGGCAGCAGACTGTAGCCAGGAAACAGATCTCTAAGAGTGTGTAGCAGCTTCCTTGAAAGCTGAACACCGTTTTGTCTAAGGCTGTACAGATGTCTCCTCACGGCTCTTCCTAGCAGACTAACAAGCTAACAGCAGGTCCTCGCTCCTCTCGGCCTTTCTGAGTTGCCTATTTTATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-'43-43,'43-42,44-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0220413=VPS9=PU(56.3=87.9)
C2:
PF0220413=VPS9=PD(41.7=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGCAAACCACAGAGCTC
R:
TCAGCTTTCAAGGAAGCTGCT
Band lengths:
258-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]