DreEX6050783 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34423823-34427551:-
Coord C1 exon
chr8:34427479-34427551
Coord A exon
chr8:34427193-34427390
Coord C2 exon
chr8:34423823-34424614
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGAATCTGCGCAGGTG
3' ss Score
7
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTATTCCATGAGCACATTCAGCGACTGTCTAGAGTGGTGTCGGCCAATCATAAAGCTCTGCAGATCCCTGAG
Seq A exon
GTGTATCTGAAAGAGGCTCCGTGGCCTTCTGCACAGGCTGAGATCAAGACCATCAACGCCTATAAGACCCCGCGAGATAAAGTGCAGTGTATCTTGCGCATGTGCTCCACCATTATGAACCTGCTCAGCCTGGCCAATGAGGATGCTGTACCCGGCGCGGATGACTTCGTCCCTGTGCTCGTCTTTGTTCTGATTAAA
Seq C2 exon
GCAAACCCACCCTGCCTTCTGTCCACCATTCAGTACATCAATAATTTCTACGCCAGCAGGCTGAGCGGGGAGGAGTGCTATTGGTGGATGCAGTTCACTGCTGCCGTGGAATTCATTAAAACCATCGACGATCGCAAGTGAAGCAGAACAGCCACCTGTATGGGCAGACTGTAGGAAGGAGAGAGAAAGAGAGAGAGAGAGAGGACAGCGCGGATGACTACTCTTCCCTTCATCCAGATCTGTAAAGGTGTACATAAATAGACACTTTGATCAAAAATTAGACAGGTTTTACTTCAACGCCGTGTTAAACGAATGAAATCCATGTTAGCAAATGGCAACGTTGGCATTCTCTACTGATCTCGCTTATAACCCACAACCTTTTCTGTAGTATTTGGGGAGCAACCGGGGCTTAGAATCAACTCTTTCTCTATATTAAAAGCAGATTTAGCAAGTAATTAGCTCTGTTGAAACGTAGCTATCAAGCGAAAAAGGGACCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183-'31-41,'31-40,32-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0220413=VPS9=PU(56.3=87.9)
C2:
PF0220413=VPS9=PD(41.7=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGAGCACATTCAGCGAC
R:
CTCCTTCCTACAGTCTGCCCA
Band lengths:
249-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]