BtaEX6046169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96172810-96174316:+
Coord C1 exon
chr11:96172810-96172896
Coord A exon
chr11:96173843-96173977
Coord C2 exon
chr11:96174127-96174316
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCCTGTTTGAACAGAGC
3' ss Score
8.64
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GTTGGCCGCCTTTTGCAGCAATTAGCAATGACTGGCTCTGAAGAGGGAGATCCCCGGACAAAGAGCAGCCTTGGAAAATTTGACAAA
Seq A exon
AGCTGTGTTGCTGCTTTCCTTGATGTTGTGATTGGAGGCCGTGCAGTGGAGACCCCGCCAATGTCCTCCGTTAATCTCCTGGAAGGGTTGAGCAGAACTGTGGTTTATATAACCTACAGTCAGCTTATTACTCTG
Seq C2 exon
GTGAATTTTATGAAGAGTGTGATGTCTGGAGATCAACTGAGAGAAGATAGAATGGCTCTTGACAACTTACTGGCAAATCTACCCCAGGCAAAGCCGGGAAAAAGCAGCAGTCTGGAAATGACCCCCTACAGTACTCCTCAGCTGTCTCCAGCAGCCACTCCAGCAAATAAAAAGAATCGGTTGCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.604
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTTTTGCAGCAATTAGC
R:
TATTTGCTGGAGTGGCTGCTG
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]