GgaEX1026086 @ galGal4
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr17:9606815-9608347:+
Coord C1 exon
chr17:9606815-9606901
Coord A exon
chr17:9607901-9608035
Coord C2 exon
chr17:9608158-9608347
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCAAACTTCTTTCCTTGCAGAGC
3' ss Score
9.71
5' ss Seq
CTGGTAATC
5' ss Score
3.45
Exon sequences
Seq C1 exon
GTTGGGAGACTTCTGCAGCAGTTGGCAATGACAGGTTCTGAAGAGGGAGATCCACGTATGAAGAGCAACCTTGCTAAATTTGACAAA
Seq A exon
AGCTGTGTTGCAGCTTTTCTAGATGTCGTTATTGATGGGCGTGCGGTTGAAACTCCTCCCATGTCTTCAGTCAACCTTCTGGAGGGGCTGAGTAGAACAGTGGTTTACATGACATACAGCCAGCTAACTACCCTG
Seq C2 exon
GTTGGTTTCATGCGAAATGTAATGTTGAGTGATCAACTTAAGGAAGATCGGATGGCTTTGGAAAACTTGCTAGCAAACTTACCCCAGAACAAACCAGGGAAGAGTAGCAGCCTTGAAATGACTCCGTATAATACCCCACAGCTCTCTCCTGCTACCACTCCAGCTAACAAAAAAAATCGATTACCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.691
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
PF153241=TALPID3=PU(0.1=0.0)
C2:
PF153241=TALPID3=FE(53.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTTCTGCAGCAGTTGG
R:
AGTGGTAGCAGGAGAGAGCTG
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]