DreEX0034284 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34464633-34475005:-
Coord C1 exon
chr8:34474919-34475005
Coord A exon
chr8:34472861-34472995
Coord C2 exon
chr8:34464633-34464825
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAGTTTTTTGGTCTTTTCAGATG
3' ss Score
8.23
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGGGCAGTTGTTGCAGCAGTTAGCAATGTCTGATGCAGATGATGGAGATCCTCGACGTAAAAGCAGTTTATTAAAGTTTGACAAG
Seq A exon
ATGTGTGTTGCCGCCTTTTTGGACGTGGTCATTGGTGGAAGGGCTGTCGAGACTCCACCGATGTCGTCAATGAATTTACTGGAGGGCCTCACACGGACTGTTGTTTACATGACTCATAATCAGCTTTTAGCTTTG
Seq C2 exon
GTGGACTTTGTGCGCAGTGTTACAGCAGGCGATCAGCTCAGAGAGGAAGAGCATCTGGCTCTAGAAACTCTTCTTGCTAATGTTCCTCAGTCCCGCACAACAAAGAGCAACAGTCTGGAGCTCACGCCCTCAAACACACCCCAGCTCTCCCCTGCTACTACACCTGCAAACAAGAAGAACAGACTCCCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183-'6-8,'6-6,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.641
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATGATGGAGATCCTCGA
R:
TGGGGAGTCTGTTCTTCTTGT
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]