RnoEX6016528 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13795724-13798118:-
Coord C1 exon
chr3:13798032-13798118
Coord A exon
chr3:13796058-13796192
Coord C2 exon
chr3:13795724-13795913
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTCCTGTTTCAACAGGGC
3' ss Score
11.1
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCCGGACCAAAAATAGCCTTGGGAAATTTGACAAA
Seq A exon
GGCTGTGTCGCTGCTTTCCTTGATGTCGTAATCGGAGGCCGTGCAGTAGAGACTCCACCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGAACTGTGGTGTATATAAGCTACAGTCAGCTTATTACTCTG
Seq C2 exon
GTAAATTTTATGAAGAGTGTGATGTCTGGAGATCAACTGAAAGAAGATAGAATGGCTCTTGACAATTTGTTGGCAAACTTGCCCCAGGCTAAGCCCGGGAAGAGCAGCAGTCTAGACATGACTCCCTACAGCACTCCTCAGATGTCTCCAGCAACCACTCCAGCCAATAAAAAGAATCGGCTACCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-'11-7,'11-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.000 C2=0.543
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTTGCAGCAGTTAGC
R:
GGAGTGGTTGCTGGAGACATC
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]