BtaEX6046254 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003525 | STXBP1
Description
Bos taurus syntaxin binding protein 1 (STXBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174619]
Coordinates
chr11:98379391-98382527:+
Coord C1 exon
chr11:98379391-98379500
Coord A exon
chr11:98380838-98380939
Coord C2 exon
chr11:98382442-98382527
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTCATGTGTTTGCCTTCAGTCC
3' ss Score
8.85
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GCATCACTGAGGAAAACCTGAACAAACTGATCCAGCACGCTCAGATCCCGCCGGAGGACAGTGAGATCATCACGAACATGGCACACCTCGGGGTGCCCATCGTCACAGAC
Seq A exon
TCCACCCTGCGTCGCAGGAGCAAGCCGGAGCGGAAGGAGCGTATCAGCGAGCAGACCTACCAGCTCTCACGATGGACCCCAATCATCAAAGACATCATGGAG
Seq C2 exon
GACACTATTGAAGACAAACTTGATACCAAGCACTACCCGTACATCTCCACCCGCTCCTCTGCCTCCTTCAGCACCACCGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003525-'24-30,'24-28,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
PF0099518=Sec1=FE(5.9=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACTGAGGAAAACCTGA
R:
TGGTGCTGAAGGAGGCAGAG
Band lengths:
186-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]