GgaEX7009697 @ galGal4
Exon Skipping
Gene
ENSGALG00000007196 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr17:2443715-2444763:+
Coord C1 exon
chr17:2443715-2443824
Coord A exon
chr17:2443908-2444009
Coord C2 exon
chr17:2444678-2444763
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCCATCCCTTCTCAGTCC
3' ss Score
8.66
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTATCACCGAGGAGAACCTGAACAAGCTGATCCAGCACGCCCAGATCCCAGCCGAGGACAGCGAGATCATCACCAACATGGCCCACCTCGGGGTGCCCATCATCACAGAC
Seq A exon
TCCACCCTGCGGCGCCGCAGCAAGCCGGAGCGGAAGGAGCGGATCAGCGAGCAGACTTACCAGCTGTCCCGGTGGACCCCCGTCATTAAGGACATCATGGAG
Seq C2 exon
GACGCCATCGAGGACAAGCTGGACACCAAGCACTACCCGTACATCTCCACCCGCTCCTCCGCCTCCTTCAGCACCACGGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.382 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
PF0099518=Sec1=FE(5.9=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAACCTGAACAAGCTGA
R:
TGACAGCCGTGGTGCTGAAG
Band lengths:
186-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]