RnoEX0087356 @ rn6
Exon Skipping
Gene
ENSRNOG00000015420 | Stxbp1
Description
syntaxin binding protein 1 [Source:RGD Symbol;Acc:3785]
Coordinates
chr3:11833194-11836452:-
Coord C1 exon
chr3:11836343-11836452
Coord A exon
chr3:11835770-11835871
Coord C2 exon
chr3:11833194-11833279
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGTGCTTGCATTCAGTCC
3' ss Score
6.25
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTATCACTGAAGAAAACCTAAACAAACTCATCCAGCACGCCCAGATCCCCCCAGAAGACAGTGAGATCATCACCAACATGGCTCACCTCGGGGTGCCCATCGTCACGGAT
Seq A exon
TCCACACTACGCCGCAGAAGCAAGCCGGAGCGGAAGGAGCGCATCAGTGAGCAGACCTACCAGCTCTCACGATGGACCCCGATCATTAAAGACATTATGGAG
Seq C2 exon
GACACCATTGAAGACAAACTGGATACAAAGCACTACCCATACATCTCTACCCGCTCTTCCGCATCCTTCAGCACCACTGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015420-'35-32,'35-31,36-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.382 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
PF0099518=Sec1=FE(5.9=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTGAAGAAAACCTAAACAAACT
R:
AGTGGTGCTGAAGGATGCG
Band lengths:
186-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]