DreEX6083580 @ danRer10
Exon Skipping
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13809610-13812320:+
Coord C1 exon
chr21:13809610-13809719
Coord A exon
chr21:13812055-13812156
Coord C2 exon
chr21:13812235-13812320
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTGTCATCTGCAGTCG
3' ss Score
10.21
5' ss Seq
GAGGTCAAT
5' ss Score
2.23
Exon sequences
Seq C1 exon
GGATCACGGAGGAAAACCTTAACAAGCTGATCCAGCATGCTCAGATCCCTCCTGAGGACAGTGAGATCATCACCAATATGGCTCACCTGGGCGTCCCCATCATCACAGAC
Seq A exon
TCGACTCTGCGCAGAGGCAAGAAGATGGACCGTAAGGAGCGTGTGAGCGAACAGACCTACCAGCTCTCTCGCTGGACCCCGCTCATCAAGGATATCATGGAG
Seq C2 exon
GATGCTATCGACGACAAGCTGGACACCAAACATTATCCATATATCTCAACACGCTCTTCCTCCTCCTTCAGCACTTCTGCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994-'15-20,'15-18,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.142 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
PF0099518=Sec1=FE(5.9=100)
C2:
PF0099518=Sec1=FE(26.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCACGGAGGAAAACCTTAACA
R:
AGAAGTGCTGAAGGAGGAGGA
Band lengths:
188-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]