MmuEX6100643 @ mm10
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32798105-32801929:-
Coord C1 exon
chr2:32801820-32801929
Coord A exon
chr2:32800580-32800681
Coord C2 exon
chr2:32798105-32798190
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGATGGGTGCTTGCTTTCAGTCC
3' ss Score
6.24
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTATCACTGAGGAGAACCTAAACAAACTCATCCAGCACGCTCAGATACCCCCAGAGGACAGCGAGATCATCACCAACATGGCTCACCTCGGCGTGCCCATCGTCACGGAT
Seq A exon
TCCACACTACGCCGCCGAAGCAAACCGGAGCGGAAGGAGCGTATCAGTGAGCAGACCTACCAGCTCTCACGATGGACCCCGATCATTAAAGACATTATGGAG
Seq C2 exon
GACACTATCGAAGACAAGCTGGATACAAAGCACTACCCATACATCTCTACCCGCTCGTCCGCGTCCTTCAGCACCACTGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-'48-29,'48-27,50-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
PF0099518=Sec1=FE(5.9=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAACCTAAACAAACTCATCCA
R:
GTGGTGCTGAAGGACGCG
Band lengths:
178-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types