BtaEX6046273 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98419886-98421634:+
Coord C1 exon
chr11:98419886-98420051
Coord A exon
chr11:98421180-98421322
Coord C2 exon
chr11:98421475-98421634
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTCACCTTCCTTCCTGGCAGCTG
3' ss Score
10.31
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCAATGGCCATCCAGCACAATCCCCAGAAGCCCCAGTACTACCTGTACCGTGCCCGGAGCCGGCAGCTCATGCAGAACATTTTTGGGGCCCGCCAGGATGTTGCCACTGTCCTGCTCCTTGACCCCAAGCAACCCAAG
Seq A exon
CTGCTTCCGCTGATGGCCAACCTTTTTCCCGGCATGTCAGTAGAAGAGGTGCTAAGCAGCCAGGTGGCAAACCTGGCTAGGTTGCAGCTGGAGCGGGTGGTGGAGCACAGCATGTACACCAGGGCCCCTCAGGACATCCTGGG
Seq C2 exon
GCAGCTCAAGGATCGGGAACAGAGGGCCCGGGCCGTGATCCTATCTTGGAAGCTGGAGCCGCCTTTACTGGAGACCCCCAAGGAGATGGAGACCCCTCTCCAGTTCCCGCAGGCAAAGCCAGAAGGCCCAGAGGAAGAGGTGCAGGTTCCTGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-'9-13,'9-12,10-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.104 C2=0.611
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(76.1=91.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGGCAGAGAACCACT
R:
CTCCATCTCCTTGGGGGTCTC
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]