DreEX6014362 @ danRer10
Exon Skipping
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65279761-65281493:-
Coord C1 exon
chr5:65281328-65281493
Coord A exon
chr5:65280065-65280201
Coord C2 exon
chr5:65279761-65279893
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTAATCTTGGACTAGGTG
3' ss Score
6.25
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAAGTTCCAGGAAGCAGCAGAAAGGTTTTCTGTTGCAATAAAGTACAACCCTGGTGTAGTTCAGTATTATGAGAATCGAGCCAAATCTTTTAACAAACTGGGCAAAACAGAGGAGGCCAAAAACGATGCCATCAGTGTTCTTGTCTTAGAGCCCACCAATGACCAG
Seq A exon
GTGGTGCCATTGCTGTTAAGTCTGCTCCCAGGATGCTCCTTGACTGATATCATGTCGTGTGCCACTGCACAATCTGTCAAAACCCTGCTCATGGAAAAGATTGAAATGTTCAACCTTGCAGTCTCCTGTATGTCAAG
Seq C2 exon
AGTAGGCAGAATGGCCCTCGCCAAGGATGACAGTCAATCACAATCATCCTCACAGAAGTTACAGGGGCAGAAGACGGAACCTTGTGATACTACAGTAGACGTTCACAGCAAACTAGTCAAGAAAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
86%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.556
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(75.0=91.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAAGCAGCAGAAAGGTT
R:
TCACAAGGTTCCGTCTTCTGC
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]