RnoEX6016484 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11803714-11804632:-
Coord C1 exon
chr3:11804467-11804632
Coord A exon
chr3:11803999-11804141
Coord C2 exon
chr3:11803714-11803840
Length
143 bp
Sequences
Splice sites
3' ss Seq
GGTTGCTCTCTTCCCGGCAGATG
3' ss Score
10.81
5' ss Seq
GTTGTAAGC
5' ss Score
4.36
Exon sequences
Seq C1 exon
GCAGTTCCAGACAGCAGAGGAGCACTTCTCGGAGGCTATAAGGCACAACCCACAGAAGCCCCAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACATACTGGGGGCCCGCCAGGATGTTGCTACTGTGCTGCTCCTGAACCCCAACTATCCAAAG
Seq A exon
ATGGCTGCAATGATGAACACCCTTTTTCCTGGCATGACTGTGGAGGGCGCCCTTAAGAGCCGAGTGGCTGAACTGGCTAGGCTCCAGCTAACCCGGATGATAGAAAACGGGCCAAGGAGAAACTACCCTCAAAGCATTGTGTT
Seq C2 exon
GCAACGGTTAATGGAACGCCAGAAAGCCCAAGCCATGGTGAGGTCCTGGAAGAAGGAGCCTCCTGAGATCCCCAAAGAAGAGGAAGTGACTATTTTCCAGGCTCCGGAGGTGGCAAAGGGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.146 C2=0.535
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(78.5=91.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGCTATAAGGCACAACC
R:
ACCTCCGGAGCCTGGAAAATA
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]