HsaEX0067785 @ hg38
Exon Skipping
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127726239-127727465:+
Coord C1 exon
chr9:127726239-127726404
Coord A exon
chr9:127726970-127727112
Coord C2 exon
chr9:127727270-127727465
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTCACCCCCTTTCGTGGCAGCTG
3' ss Score
8.77
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCCACGGCCATCCGGCACAACCCCCAGAAGGCCCAGTACTACCTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTTTGGGGCCCGCCAGGATGTGGCCACTGTCCTGCTCCTCAACCCCAAGCAACCAAAG
Seq A exon
CTGTCCCTGCTGATGACCAACCTCTTCCCGGGCATGTCGGTGGAGGAGGTGCTTAGCACCCAGATAGCCCACCTGGCCAGGCTGCAGCTGGAGCAGATGGTGGAGGGCAGCCTGCAGGCCGGCAGCCCACAAGGCATTGTGGG
Seq C2 exon
GATGCTTAAACGGCACGAGTTGGAGCGCCAGAAGGCCTTGGCCCTGCAGCACTCATGGAAGCAGGGGGAGCCTTTGATTGCGACCTCCGAGGAGCTGAAGGCCACCCCTGAGATTCCGCAGGTAAAACCGGGAAGCTCAGAGGGAGAGGCTGAGGCCCCTGAGGAGGAGGAAGAAAAGGAGAAGGAGAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.188 C2=0.727
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(78.5=91.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGGCAGAGAACCACT
R:
CTCGGAGGTCGCAATCAAAGG
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development