MmuEX6100619 @ mm10
Exon Skipping
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32767178-32768102:-
Coord C1 exon
chr2:32767937-32768102
Coord A exon
chr2:32767473-32767615
Coord C2 exon
chr2:32767178-32767301
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCGCTGTTCCGACCCGGCAGATG
3' ss Score
7.73
5' ss Seq
GGTGTAAGC
5' ss Score
4.48
Exon sequences
Seq C1 exon
GCAGTTCCAGACAGCAGAGGAGCACTTCTCGGAGGCCATAAGGCACAGCCCTCAGAAACCACAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACACTCTGGGGGCCCGCCTGGATGTCGCTACTGTACTGCTTCTCAATCCCGAGTATCCCAAG
Seq A exon
ATGGCTGCAGTGATGAACACCCTCTTTCCTAGCATGACTGTGGAGAATGTGCTTAAGTCCCAAGTGGCCGAACTGGCCAAGCTCCAGCTAAGTCGGATGATAGAAAATGGGCCGAAGAACATCTACCCTCAGAGCACTGTGGT
Seq C2 exon
GCAGCGGTTATTGGAACGCAGGAAAGCCCAAGTCCTGGTGAAGCTCTGGAAGCAGGAACGTCTTGGGACCCCTGAAGAGGAAGTGACTCTTTACCAGGCTCCGCAGCTGGCAGAGGAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'18-22,'18-20,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.025 C2=0.271
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(78.5=91.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGCAGAGGAGCACTTCT
R:
TCACTTCCTCTTCAGGGGTCC
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types