BtaEX6046285 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015375 | SH2D3C
Description
Bos taurus SH2 domain containing 3C (SH2D3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001098039]
Coordinates
chr11:98444974-98454062:-
Coord C1 exon
chr11:98454023-98454062
Coord A exon
chr11:98446881-98447009
Coord C2 exon
chr11:98444974-98445428
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTGTCTTCTGCCTAGTTC
3' ss Score
8.02
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGCCACTGCAGAGCCGGAGGCTGGCGGGGACTATGTGAAG
Seq A exon
TTCTCCAAGGAGAAGTACATCTTAGACTCATCGCCTGAGAAACTGCACAAGGAGTTGGAGGAAGAGCTCAAACTCAGCAGCACAGATCTCCGCAGCCATGCCTGGTACCACGGCCGCATCCCACGTGAG
Seq C2 exon
GTCTCGGAGACCCTGGTGCAGCGCAATGGTGACTTCCTCATCCGGGACTCGCTCACCAGCCTGGGTGACTATGTGCTTACGTGCCGCTGGCGCAACCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCGGGTGAGAGCTACACCCACATCCAATACCTGTTCGAGCAGGAGAGCTTCGACCACGTGCCGGCCCTGGTGCGGTACCATGTGGGCAGCCGCAAGGCTGTGTCGGAGCAGAGCGGTGCCATCATCTACTGCCCGGTCAACCGCACCTTCCCACTGCGCTACCTGGAGGCCTGCTATGGCCTGGGCCAGGGCGGGGGCAAGGCCGCCAGCCCTGCCAGCCCCTCGGGCCCCAAGGGCAGCCACATGAAGCGGCGGAGCGTCACCATGACCGATGGGCTTACTGCTGACAAGGTCACCCGCAGTGATGGCTGCCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015375-'4-8,'4-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.163 C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(9.9=18.6)
C2:
PF0001719=SH2=PD(87.7=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGGGGACTATGTGAAG
R:
GCCCACATGGTACCGCAC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]