GgaEX0027586 @ galGal3
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
NA
Coordinates
chr17:5537099-5547950:+
Coord C1 exon
chr17:5537099-5537138
Coord A exon
chr17:5545459-5545587
Coord C2 exon
chr17:5547826-5547950
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTTGCTGTACAGTTC
3' ss Score
8.26
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCACCACGATGGCCTGGAGTCCAGCAGCGAATACGTGAAG
Seq A exon
TTCTCCAAGGAGAAATACATCCTGGACTCGTCACCGGAGAAGCTTCACAAGGAGCTGGAAGAGGAGCTGAAGCTGAGCAGCACCGACCTGCGCAGCCACGCGTGGTACCACGGCCGCATCCCGCGGGAG
Seq C2 exon
CGTGTCCCTGCCGCACCACAGGGACATCATCCGCAACTGTGCTGTCAGCGTGGACCAGATCCAGGACCTGCACTCCCCAATGTCACCCATCTCAGAGAACCCCACCTCACCCGCGTACAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.256 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(9.9=18.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGATGGCCTGGAGTC
R:
CTGTGCTGTACGCGGGTG
Band lengths:
163-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]