DreEX6087249 @ danRer10
Exon Skipping
Gene
ENSDARG00000028099 | sh2d3ca
Description
SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]
Coordinates
chr10:10252082-10296740:+
Coord C1 exon
chr10:10252082-10252481
Coord A exon
chr10:10289616-10289744
Coord C2 exon
chr10:10296313-10296740
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTGTGTTTTGCAGTTC
3' ss Score
10.79
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
AGCGATGAGGTAATCCCTGCCAGCGCTGTGAAGCATAGCAAGCGCTAGAGTGAGAGTAAGAGGCAGCGGAACTGAGCGAGAGAGAGAGAGAGAGATACATTGAAAGTCAGAGAGGGAGAGAGAGATCTAGACATTGAGAGGGAGAGAGAGAGGAAGCCGGTGCGGATCTGGGATGACACTTGCTCCAGTGGAACGGCGATAGCACTGATCAGTTGCGGCTGTGGCTTGTGCACGGGTGAACGCAAGGGGATAGGGGCATGACCCGGGGTTTCTAGAGGACTCCAGGGGTGGAAGAGTCGAAGAGAGGAGGACCGGAGCCATGACGGAGAGATGCAGCCTGTGGAGTGCCCTGTCAGCGGCTGCCTGCTGCTTCTACAGGGGCTCCTTCATGCAGGTGCAG
Seq A exon
TTCTCCAAGGAGAAGTACCTGCTGGAGTCTCCTCCAGAGAAACTCAGGAAGGAGCTGGAGGAGGAACTCAAACTCAGCAGCAGTGACATGAGGAGCCACGGCTGGTACCATGGCCATATTCCACGAGAG
Seq C2 exon
GCCTCTGAAACCTTGGTCCTACGCAGCGGCGACTTCCTAGTACGGGACTCCTTGTCAACAGTGGGCGACTATGTCCTGACCTGTCGCTGGCAGCAAGAAGTGATACACTGTCGGATCAGTAAAGTCCTGGTCAAAAGCGGACAAACTAAAATCCAGTACATGCTGGAGAATGAGAGCTTCGATTCTGTCCCCACGCTGGTAAGGCACCACGCTGGTACAGGTCGAGCAGTGTGTCCACGAACAGGAGCCCAGCTGCTGTGTCCGGTGAACCGAACGCTGCCACTGAGGTACCTGGAGGCCACGTTTGCTTTAGCTGGAGGAAGACCTGGATCTGCATATTCACCATCTGCCCAGAGGGGGGCGCATATCAAAAGACGCAGTGTTACTATGACAGATGGACTCACGACAGAGAAGATCATTCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028099-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(10.1=18.6)
C2:
PF0001719=SH2=PD(87.3=48.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCACTGATCAGTTGCGGC
R:
AGTCCCGTACTAGGAAGTCGC
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]