GgaEX0027586 @ galGal4
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr17:4909910-4918016:+
Coord C1 exon
chr17:4909910-4909949
Coord A exon
chr17:4917269-4917397
Coord C2 exon
chr17:4917568-4918016
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTTGCTGTACAGTTC
3' ss Score
8.26
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCACCACGATGGCCTGGAGTCCAGCAGCGAATACGTGAAG
Seq A exon
TTCTCCAAGGAGAAATACATCCTGGACTCGTCACCGGAGAAGCTTCACAAGGAGCTGGAAGAGGAGCTGAAGCTGAGCAGCACCGACCTGCGCAGCCACGCGTGGTACCACGGCCGCATCCCGCGGGAG
Seq C2 exon
GTCTCAGAGAGCCTCGTGCAGAGGAACGGCGACTTCCTCATCCGCGACTCGCTCACCAGTGTGGGTGACTACGTGCTGACGTGCCGCTGGCGCAACGAGCCCCTCCACTTCAAGATCAACAAGGTGACGGTGAAGTCCAGCGACGGCCGTACCCGCGTCCAGTACCTCTTCGAGCAGGAGAGCTTTGACAACGTGCCCGCCCTCGTCCGCTTCTACGTGGGCAACCGCAAGGCCATCTCCGAACAGAGCGGTGCCATCGTCTACTGCCCCATCAACCGCACCTTCCCCCTGCGCTACCTGGAGGCCAGCTATGGGCTCGCCAATGGGAAGCACGGGGGGTCCCACAGCCCGGCCTCCCAGAAGGGGGGGCACATCAAGAGGAGGAGCATCACCATGACAGACGGGCTGACAGCCGACAAGATCACCAGGGCTGAAGGGTGCTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036-'4-9,'4-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.256 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(9.9=18.6)
C2:
PF0001719=SH2=PD(87.7=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGCAGCGAATACGTGAA
R:
GTTGCCCACGTAGAAGCGG
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]