RnoEX0080387 @ rn6
Exon Skipping
Gene
ENSRNOG00000054560 | Sh2d3c
Description
SH2 domain containing 3C [Source:RGD Symbol;Acc:1307287]
Coordinates
chr3:11773699-11784411:+
Coord C1 exon
chr3:11773699-11773738
Coord A exon
chr3:11782749-11782877
Coord C2 exon
chr3:11783957-11784411
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACCTCGCTGTCCCCATGCAGTTC
3' ss Score
8.5
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTGCTGCAGAACTGGAGGCTGCTGGGGACTATGTGAAG
Seq A exon
TTCTCCAAGGAGAAGTACATTCTCGACTCCTCGCCAGAGAAGCTGCACAAGGAGCTGGAGGAAGAGCTGAAGCTCAGCAGTACAGACCTCCGCAGCCATGCCTGGTATCATGGACGTATCCCTCGTGAG
Seq C2 exon
GTCTCCGAGACCCTGGTGCAGCGGAACGGCGACTTCCTCATCCGTGACTCTCTCACCAGTCTGGGGGACTATGTGCTCACGTGCCGCTGGCACAATCAGACCTTGCACTTCAAGATCAACAAGGTGGTGGTGGAGGCTGGCGAGAGCTACACCCACATCCGGTACCTCTTCGAGCAGGAGAGCTTCGACCACGTGCCCGCCCTTGTGCGCTATCATGTGGGCAGCCGTAAGGCCGTGTCCGAACAGAGTGGGGCCATCATCTACTGCCCCGTCAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTACGGCCTGAGCCAGGGCAGCAGCAAGGCTGCCAGCCCAGCCAGCCCCTCAGGCCCCAAGGGCAGCCACATGAAAAGACGCAGCGTTACCATGACTGATGGGCTCACCTCTGACAAGGTCACCCGCGGAGATGGCTGCCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054560-'4-14,'4-11,11-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.081 C2=0.283
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(9.9=18.6)
C2:
PF0001719=SH2=PD(87.7=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGGGACTATGTGAAG
R:
CCCACATGATAGCGCACAAGG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]