BtaEX6046310 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006305 | AK1
Description
Bos taurus adenylate kinase 1 (AK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013582]
Coordinates
chr11:98556438-98558396:-
Coord C1 exon
chr11:98558358-98558396
Coord A exon
chr11:98556784-98556819
Coord C2 exon
chr11:98556438-98556601
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTTCTCTCCCACAGAGA
3' ss Score
12.79
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGCGCTGACTCGGCTGCCCGGATCACAGCAGGATGGAAG
Seq A exon
AGAAGCTGAAGAAAACCAAGATCATCTTTGTGGTGG
Seq C2 exon
GCGGGCCCGGCTCGGGGAAGGGCACCCAGTGTGAGAAGATTGTGCAGAAGTACGGCTACACCCACCTCTCCACCGGAGACCTCCTGCGGGCCGAGGTCAGCTCGGGCTCGGCTAGGGGCAAGATGCTGTCAGAAATCATGGAGAAGGGGCAGCTGGTGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006305-'8-5,'8-4,13-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=PU(1.3=15.4)
C2:
PF0040617=ADK=FE(34.4=100)
Main Skipping Isoform:
ENSBTAT00000054038fB472
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCCGGATCACAGCA
R:
TCCGGTGGAGAGGTGGGT
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]