GgaEX1007189 @ galGal4
Exon Skipping
Gene
ENSGALG00000029150 | AK1
Description
Adenylate kinase isoenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:P05081]
Coordinates
chr17:4877410-4879522:+
Coord C1 exon
chr17:4877410-4877489
Coord A exon
chr17:4878937-4878972
Coord C2 exon
chr17:4879359-4879522
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTCTCTCCACCAGAAA
3' ss Score
10.58
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTGCCGTGCCTCTCACTCTGCTCTGCTTCCCTTGCAGCCTGAAGTGCTCCTCCACCCAGACAGCAGCAGCATGTCGACAG
Seq A exon
AAAAACTGAAGCACCACAAGATCATCTTCGTGGTGG
Seq C2 exon
GTGGCCCCGGCTCAGGGAAGGGGACGCAATGCGAGAAGATTGTGCACAAGTATGGGTACACTCACCTCTCCACTGGGGACCTGCTCCGGGCAGAGGTCAGCTCGGGCTCAGAGCGGGGCAAGAAGCTGCAAGCCATCATGGAGAAGGGCGAGCTGGTTCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029150-'0-1,'0-0,5-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=PU(1.3=15.4)
C2:
PF0040617=ADK=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCTTGCAGCCTGAAGTG
R:
GTGGAGAGGTGAGTGTACCCA
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]