RnoEX0002973 @ rn6
Exon Skipping
Gene
ENSRNOG00000049056 | AABR07051450.1
Description
NA
Coordinates
chr3:11649084-11657564:+
Coord C1 exon
chr3:11649084-11649863
Coord A exon
chr3:11651209-11651222
Coord C2 exon
chr3:11657373-11657564
Length
14 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCGTTCTCTCCACAGACA
3' ss Score
12.8
5' ss Seq
AAGGCCAAG
5' ss Score
-5.77
Exon sequences
Seq C1 exon
GCCTGGGCTACAGAGAATGCACCCTGTCTCAAAAGGAACAAAACAAACCTTACAGGATTGAGCCCCAGGAGTGTCTCTGCCACCTGTCCAGGTCCCAGGCAAGGAGGAGACTCCTGCCAGCGTCCTGGCCCCTGGGAGTGTTGTCAAGGCACATAACAGAGGCCGCCCTCACTTGCTAGGGAGAGATACCATAGAGTTGTTCACACCCTCTTTGACCTCTACCCAGGCACCTCCAGCAGACCAAGGCACACACTGGAGGGGTGACAGAGGCAATAGAAGCCAGCAGGAAGGTGATTTTTCCAAGGTCATTCTGCCTCCTGGGTATCTCTCTACACCCTTGGCCTCTCCGGTTGGAAATTGCAAGCAGGAGCCTGGCACTTACTGCTGTGGGTGGGGCTTGGTGGAAGCTGAGTCAGGGGTGGGAGGAGAACCCCTCACCCCTGCCTGTGCCTTGTCTTGCAGAGCGCTGACCTAGCTCCCAGACCTCAGCAGGATGGAAG
Seq A exon
ACAAGCTGAAGAAG
Seq C2 exon
ATCGCACAGCCCACACTGCTACTGTATGTGGACGCAGGCCCCGAGACCATGACCCAACGACTCCTAAAGCGAGGGGAGACCAGTGGCCGTGTGGACGATAACGAGGAGACCATCAAGAAGAGGCTGGAGACGTATTACAAAGCCACAGAACCTGTCATCTCCTTCTATGACAAACGCGGCATTGTGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049056_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.261
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040617=ADK=PD(37.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTAGCTCCCAGACCTCAG
R:
CGCTTTAGGAGTCGTTGGGTC
Band lengths:
103-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]