HsaEX6063149 @ hg19
Exon Skipping
Gene
ENSG00000106992 | AK1
Description
adenylate kinase 1 [Source:HGNC Symbol;Acc:361]
Coordinates
chr9:130634969-130636928:-
Coord C1 exon
chr9:130636890-130636928
Coord A exon
chr9:130635305-130635340
Coord C2 exon
chr9:130634969-130635132
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTTTCTCTCCCGCAGAGA
3' ss Score
14.05
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGCACTGACACGGCTCCCGGGACCTCGGCAGGATGGAAG
Seq A exon
AGAAGCTGAAGAAAACCAAGATCATCTTTGTGGTGG
Seq C2 exon
GTGGGCCTGGCTCAGGGAAGGGCACCCAGTGTGAGAAGATCGTGCAGAAGTATGGCTACACCCACCTCTCCACCGGGGACCTCCTGCGGTCCGAGGTCAGCTCAGGCTCGGCCAGGGGCAAGAAGCTGTCGGAAATCATGGAGAAGGGGCAGCTGGTTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106992-'2-7,'2-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=PU(1.3=15.4)
C2:
PF0040617=ADK=PU(14.0=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCGGCAGGATGGAAG
R:
TGAGCTGACCTCGGACCG
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)