MmuEX6100581 @ mm10
Exon Skipping
Gene
ENSMUSG00000026817 | Ak1
Description
adenylate kinase 1 [Source:MGI Symbol;Acc:MGI:87977]
Coordinates
chr2:32628451-32630398:+
Coord C1 exon
chr2:32628451-32628488
Coord A exon
chr2:32629849-32629884
Coord C2 exon
chr2:32630235-32630398
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCCGTTCATTCTTCCCACAGAGA
3' ss Score
11.48
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGTGCTGACCTAGCTCCCAGATCTCAGCAGGATGGAAG
Seq A exon
AGAAGCTGAAGAAGGCCAAGATCATCTTTGTGGTGG
Seq C2 exon
GCGGACCTGGCTCAGGAAAGGGCACCCAGTGCGAGAAGATTGTACAGAAATATGGCTACACCCACCTGTCTACTGGGGACCTGCTTCGGGCAGAAGTCAGCTCTGGATCGGAGAGGGGCAAGAAGCTGTCGGCTATCATGGAGAAGGGAGAGCTAGTGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026817-'12-12,'12-10,19-12
Average complexity
C1
Mappability confidence:
93%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=PU(1.3=15.4)
C2:
PF0040617=ADK=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAGCTCCCAGATCTCAGC
R:
GAAGCAGGTCCCCAGTAGACA
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types