BtaEX6046345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98813573-98815602:-
Coord C1 exon
chr11:98815010-98815602
Coord A exon
chr11:98814628-98814749
Coord C2 exon
chr11:98813573-98813770
Length
122 bp
Sequences
Splice sites
3' ss Seq
GCACGCCTCTGTCATTTCAGGCC
3' ss Score
7.44
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
Exon sequences
Seq C1 exon
ACCCGAGCTGCTGCCTGAGCCCCTGGAAGCCCACGTGCAGCCACGATTTCAGCCCCAGGTCCTGCAGATCACAGCCCAGGTGCAGCCACAGACGCTCCCCGTAAATGCCCAGGTGCAGCCAAAGCTACAGAAGCAGGCACAGACGCAGACCTCTCCAGAGCACTCAGCACTGCAGCAGGTGCAGCGGCAGCCGCAGGAAGAGGCAGAGCCACGACGACAGGCGCAGCCGCAGCCCCCCAGGCACGTGCAGCCGCTGCTACAGAAGCAGGCACAGACGCAGACGTGCCCACAGGTCCAGGCGGAAGCACAGCCGAGGCTCCAGCCGCCGGAGCAGCCACCCAAGCAACCTCTGGTTCAGTTACCGGTGCAGCCACTGGAACCGGCCCAGGGACAGCCTCAGACTCAGCCACAGGTGTCAGTGCCAGCGTCAGAGAAAGCCCCAGTTCTGGTTCGCTCTGCAGCGCTGGAAAGATTGCCTGATACAGTAGAAGCTAGAGCAG
Seq A exon
GCCCAGAGGAGGCCCCACCAGAGCCAGGGGGCGCCCAGGCCAGCATGGAGGAGAGCCAGGAGGAGCTGACCGGTGGCCTGGATGTGGCAGAATGTGAAAAAAGAGCGAGAGAGATGCTGGGG
Seq C2 exon
GTGTGGGGGGCTGGGGGATCCCTGAAGGTCACCATCCTGCAGAGCAGCGACAGCCGGGCCTTTAGCACCGTACCCCTCACACCCGGTCCCCGGGCCAGCGACTCTACCTCTGCCACCCCTGCGGCGGCCAGCACACCCTCTAAGCAGGCCCTTCAGTTCTTCTGCTACATCTGCAAGGCCGGCTGCAGTAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274-'11-19,'11-18,12-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.805 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF121713=zf-C2H2_jaz=PU(51.9=21.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGCAACCTCTGGTTCAG
R:
TGTGAGGGGTACGGTGCTAAA
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]