HsaEX0015440 @ hg38
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128170020-128179415:-
Coord C1 exon
chr9:128179073-128179415
Coord A exon
chr9:128178369-128178490
Coord C2 exon
chr9:128170020-128170035
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAGCACATCTGTCATTTCAGGCA
3' ss Score
4.17
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
Exon sequences
Seq C1 exon
CTCAGAAGAGCCCACAGAGAAGGAACCTCCAGGGCAGTTACAGGTGAAGGCCCAGCCGCAGGCCCGGATGACAGTACCGAAACAGACACAGACACCAGACCTGCTGCCTGAGGCCCTGGAAGCCCAAGTGCTGCCACGATTCCAGCCACGGGTCCTGCAGGTCCAGGCCCAGGTGCAGTCACAGACTCAGCCGCGGATACCATCCACAGACACCCAGGTGCAGCCAAAGCTGCAGAAGCAGGCGCAAACACAGACCTCTCCAGAGCACTTAGTGCTGCAACAGAAGCAGGTGCAGCCACAGCTGCAGCAGGAGGCAGAGCCACAGAAGCAGGTGCAGCCACAG
Seq A exon
GCATGGAAAAGACCTTGCCAGAGCCTGTGGGCACCCAAGTCAGCATGGAAGAGATTCAGAATGAGTCGGCCTGTGGCCTAGATGTGGGAGAATGTGAAAACAGAGCGAGAGAGATGCCAGGG
Seq C2 exon
GACACAGGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337_MULTIEX1-3/9=C1-7
Average complexity
C3
Mappability confidence:
86%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.888 C2=0.230
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development