MmuEX0011466 @ mm10
Exon Skipping
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32370864-32372495:+
Coord C1 exon
chr2:32370864-32371408
Coord A exon
chr2:32371636-32371757
Coord C2 exon
chr2:32372298-32372495
Length
122 bp
Sequences
Splice sites
3' ss Seq
GAACGTATATGTCATTTCAGACC
3' ss Score
4.84
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
AAGGGTCCAGCCTCAGACCCAGATGACAGCACCAAAGCAGACACAGACCCCGGATCGGCTGCCTGAGCCACCAGAAGTCCAAATGCTGCCGCGTATCCAGCCACAGGCACTGCAGATCCAGACCCAGCCAAAGCTGCTGAGGCAGGCACAGACACAGACCTCTCCAGAGCACTTAGCGCCCCAGCAGGATCAGGTAGAGCCACAGGTACCATCACAGCCCCCATGGCAGTTGCAGCCACGGGAGACAGACCCACCGAACCAAGCTCAGGCACAGACCCAGCCTCAGCCCCTCTGGCAGGCGCAGTCACAGAAGCAGGCCCAGACACAGGCACATCCACAGGTACCCACCCAAGCACAGTCACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCAGTACCCCCACCAGAACAAGCGTCAGGTCCAGCCTGTGCCACGGAACCACAGCTATCCTCTCACGCTGCAGAAGCTGGGAGTG
Seq A exon
ACCCAGACAAGGCCTTGCCAGAACCAGTAAGTGCCCAGAGCAGTGAAGACAGGAGCCGGGAGGCGTCCGCTGGTGGCCTGGATTTGGGAGAATGTGAAAAGAGAGCGGGAGAGATGCTGGGG
Seq C2 exon
ATGTGGGGGGCTGGGAGCTCCCTGAAGGTCACCATCCTGCAGAGTAGCAACAGCCGGGCCTTTAACACCACACCCCTCACATCTGGACCTCGCCCTGGGGACTCTACCTCTGCCACCCCTGCCATTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCAGCAGCAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-'25-38,'25-35,28-38
Average complexity
S
Mappability confidence:
80%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.498
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127562=zf-C2H2_2=PU(50.0=39.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCACATCCACAGGTAC
R:
GAGGGGTGTGGTGTTAAAGGC
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types