RnoEX0021394 @ rn6
Exon Skipping
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11400241-11402217:+
Coord C1 exon
chr3:11400241-11400791
Coord A exon
chr3:11401013-11401134
Coord C2 exon
chr3:11402020-11402217
Length
122 bp
Sequences
Splice sites
3' ss Seq
GAACGTATATGTCATTTCAGACC
3' ss Score
4.84
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
CCAGCCTCAGACCCAGATGACAGCACCAAAGCAGACACAGACCCCAGATCAGCTGCCTGAGCCACCGGAAGCCCTGGTGGTGCCGCGAATCCAGCCACAGGTTCTGCAGATCCAGACTCTGTCAAAGCTGCAGAAGCAGGCACAGACACAGACTTCTCCAGAGCACTTAGCGCCCCAGCAGAATCAGGTACAGCCACAGGTACGGTCACAGCCCCAGTGGCAGTTGCAGCCATGGGAGACAGACCCACCGAAGCAAGCTCAGGCACAGACCCAGCCTCAGCCCCTCTGGCAGGCGCAGTCGCACAAGCAGGCCCAGACACAGACACAGACACATCCACAGGTATCCACCCAAGCACAGCCACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCGGCACCCCCACCAGAACAAGCATCAGTTCCGGCCTGTGCCACGGAACCACAGCTATTATCTAACGCTGCAGAAGTTGGGAGAG
Seq A exon
ACCCAGAGGAGACCTTGCCAGAACCAGTAAGTGCCCAGAGCAGTGAAGACAGGAGCCAAGAGCCGTCAGCTGGTGGCCTGGATGTGGGAGAATGTGAAAAGAGAGCAGGAGAAGTGCTGGGG
Seq C2 exon
ATGTGGGGGGCTGGGAGCTCCCTGAAGGTCACCATCCTGCAGAGTAGCAACAGCCGGGCTTTCAACACCACACCCCTCACATCTGGACCTCGCCCTGGGGACTCCGCCTCTGCCACCCCTGCCCTTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCAGCAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-'12-20,'12-18,14-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.951 C2=0.515
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127562=zf-C2H2_2=PU(50.0=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAGCATCAGTTCCGGC
R:
GGCCTTGCAGATGTAGCAGAA
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]