BtaEX6046371 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98885131-98886558:-
Coord C1 exon
chr11:98886465-98886558
Coord A exon
chr11:98886268-98886374
Coord C2 exon
chr11:98885131-98885189
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGCTGTCATTTTAGGGG
3' ss Score
9.25
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTCCACATTCAGACTATCGGAATTTTGGTGTCAGAGAAGACGGAGTTACAGACAGCTCTGGCTCACACCCAGCAGGCAGCCAGGCAGAAAGCAG
Seq A exon
GGGAGTCAGAGGATCTTGCTAACCGCCTGCAGTCTTCCAGGCAGCGCGTAGGAGAGCTGGAGCGGACGCTGTCTGCAGTCTCCACGCAGCAGAAGCAGGCCGACAGG
Seq C2 exon
TACAACAAAGAATTGACCAGAGAGCGAGATGCCCTCAAGCTGGAATTATACAAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.843 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACATTCAGACTATCGGAA
R:
TGTATAATTCCAGCTTGAGGGCA
Band lengths:
146-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]