DreEX6008905 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1406016-1407596:-
Coord C1 exon
chr5:1407503-1407596
Coord A exon
chr5:1406156-1406262
Coord C2 exon
chr5:1406016-1406074
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGCGTGTGTGTGTGTTGCAGCAG
3' ss Score
9.61
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
GTCCACATTCAGACCATCGGCATCCTGGTGTCTGAGAAATCAGAGCTGCAGACGGCCCTGTCTTACACACAGCAGGCAGCGCGGCAGAAAGCAG
Seq A exon
CAGAGGCAGAGGATCTGAGCTCGCGGCTGCAGGCCAGTAAGCAGCGAGTGTCTGAGTTAGAGAGAACACTATCTTCAGTCTCTACACAGCAGAAGCAGCACGAGAGG
Seq C2 exon
CACAACAAAGAGCTGGAAAAGGAGAGAGACAGTCTACGGTTAGAGATCATCAGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.806 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATTCAGACCATCGGCAT
R:
TCTGATGATCTCTAACCGTAGACTGT
Band lengths:
146-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]