HsaEX6063200 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131025313-131028160:-
Coord C1 exon
chr9:131028067-131028160
Coord A exon
chr9:131027864-131027970
Coord C2 exon
chr9:131025313-131025371
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCAACCTCTCTCATTCCAGGAG
3' ss Score
9.49
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTCACATTCAGACCATAGGGATCCTCGTATCAGAGAAAGCTGAGTTACAGACAGCCCTGGCTCACACTCAGCATGCTGCCAGGCAGAAAGAAG
Seq A exon
GAGAGTCTGAAGATCTGGCCAGCCGCCTGCAGTATTCCCGGCGGCGTGTGGGAGAGTTGGAGCGGGCTCTCTCTGCTGTCTCCACGCAGCAGAAGAAGGCAGACAGG
Seq C2 exon
TACAACAAGGAGTTAACCAAAGAGAGAGACGCCCTCAGGCTGGAGTTATACAAGAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.430 A=0.614 C2=0.600
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(23.5=100),PF113073=DUF3109=PD(30.2=90.6)
A:
PF0157614=Myosin_tail_1=PD(14.5=47.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATTCAGACCATAGGGATCCT
R:
CTTGTATAACTCCAGCCTGAGGG
Band lengths:
146-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)