MmuEX6100524 @ mm9
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32154552-32157263:+
Coord C1 exon
chr2:32154552-32154645
Coord A exon
chr2:32154724-32154830
Coord C2 exon
chr2:32157205-32157263
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGGACCTCTCTTGTTCCAGGAG
3' ss Score
8.88
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTTCACATTCAGACCATAGGCATCCTGGTGTCTGAGAAGGCAGAATTACAGACGGCCCTGGCCCACACTCAGCAAGCAGCCAGGCAGAAAGCAG
Seq A exon
GAGAGTCGGAGGATCTTGCCAGCCGACTACAGTCCTCCCGACAGCGTGTGGGAGAGCTGGAGCGGACACTGTCTACCGTGTCAACGCAACAGAAACAGGCAGACAGG
Seq C2 exon
TATAACAAGGACCTAACCAAAGAGCGGGATGCCCTCAAGCTGGAGCTGTATAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'15-22,'15-20,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.408 A=0.901 C2=0.713
Domain overlap (PFAM):
C1:
PF106024=RPN7=PD(12.5=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATTCAGACCATAGGCATCC
R:
GCTCCAGCTTGAGGGCATC
Band lengths:
138-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: