GgaEX1001069 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5004189-5005740:+
Coord C1 exon
chr17:5004189-5004282
Coord A exon
chr17:5004950-5005056
Coord C2 exon
chr17:5005682-5005740
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTGACTTGCTTAGGAG
3' ss Score
7.23
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTCACATCCAGACGATTGGAATCCTAGTTTCTGAGAAATCTGAGTTGCAGACAGCCCTTGGACATACTCAACAAGCTGCACGGCAGAAATCAG
Seq A exon
GAGAAGCTGAAGACCTTGCTGCTCGTTTACAGTCATCTCGCCAGAGGGTATCAGAGCTGGAACGCACTTTGTCCTCCATCTCCATGCAGCAAAAACAGTCAGAGAAG
Seq C2 exon
CATAATAAAGAGTTGGTGAAGGAGCGAGACAACCTGAAACTAGAACTGTACAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.778 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGACGATTGGAATCCTAGT
R:
TGTACAGTTCTAGTTTCAGGTTGTCT
Band lengths:
139-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]