BtaEX6046524 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010208 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr11:99257650-99261701:-
Coord C1 exon
chr11:99261513-99261701
Coord A exon
chr11:99260372-99260469
Coord C2 exon
chr11:99257650-99257752
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTGATTTTTCTTCCTGCAGGTC
3' ss Score
11.19
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CAACCTGCTGGAGAGCAAGGCAGATGGAATTGAGGTTTCCTACAACGCCTGCGGCGTCCTCTCCCACATCATGTTTGATGGGCCCGAAGCCTGGGGCATCTGTGAACCCCAGCGGGAGGAGGTGGAGGAGCGCATGTGGGCAGCCATCCAGAGCTGGGACATCAACTCACGGAGAAACATCAATTACAG
Seq A exon
GTCATTTGAGCCAATTCTCCGCCTTCTTCCCCAGGGCATCTCGCCTGTCAGCCAGCACTGGGCCACCTGGGCCCTCTACAACCTGGTGTCTGTCTACC
Seq C2 exon
CGGACAAGTACTGCCCTCTGCTGATCAAAGAAGGTGGGATGCCCCTCCTGAGGGACATGATCAAGATGGCGACCGCGCGACAGGAGACCAAGGAAATGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010208-'22-16,'22-14,23-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PD(16.4=46.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCTCTCCCACATCATGT
R:
GGGCATCCCACCTTCTTTGAT
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]