RnoEX0100927 @ rn6
Exon Skipping
Gene
ENSRNOG00000025832 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:RGD Symbol;Acc:1310284]
Coordinates
chr3:8665497-8667270:-
Coord C1 exon
chr3:8667082-8667270
Coord A exon
chr3:8666253-8666350
Coord C2 exon
chr3:8665497-8665599
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACGGCGCCTCTCTCCTGCAGGTC
3' ss Score
12.13
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CAACCTGCTGGAAAGCAAGGCCGATGGCATTGAGGTTTCTTACAATGCCTGTGGTGTCCTATCCCACATCATGTTTGATGGGCCTGAAGCCTGGGGTGTCTGTGAACCCCAGCGGGCAGAGGTGGAGGAGCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAG
Seq A exon
GTCCTTTGAGCCGATCCTCCGCCTCCTTCCCCAGGGCATCTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACC
Seq C2 exon
CTGACAAGTACTGCCCCCTGCTGATTAAGGAAGGCGGGATGCCCCTGCTGAGGGACTTGATCAAGATGGTTACTGCCCGGCAGGAAACCAAGGAGATGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025832-'27-30,'27-29,30-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGTGTCCTATCCCACA
R:
CGCCTTCCTTAATCAGCAGGG
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]