MmuEX1028336 @ mm10
Exon Skipping
Gene
ENSMUSG00000039686 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:MGI Symbol;Acc:MGI:2442511]
Coordinates
chr2:30100314-30101953:-
Coord C1 exon
chr2:30101765-30101953
Coord A exon
chr2:30101036-30101133
Coord C2 exon
chr2:30100314-30100416
Length
98 bp
Sequences
Splice sites
3' ss Seq
AAGTGGTCTCTCTCCTGCAGGTC
3' ss Score
10.79
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CAACCTGCTGGAGAGCAAGGCCGACGGCATTGAGGTTTCTTACAACGCCTGTGGTGTCCTCTCTCACATCATGTTTGATGGGCCTGAGGCCTGGGGTGTCTGTGAACCTCAGAGGGCAGAGGTGGAGGATCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAG
Seq A exon
GTCCTTTGAGCCAATCCTCCGCCTCCTTCCCCAGGGTATTTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACC
Seq C2 exon
CTGACAAGTACTGCCCCCTGCTGATTAAAGAAGGTGGGATGCCCCTGCTGAGAGACTTGATCAAGATGGCAACTGCCCGGCAGGAAACCAAGGAGATGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039686_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PD(13.7=46.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAGGATCGTATGTGGG
R:
CCATCTCCTTGGTTTCCTGCC
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types