HsaEX6063340 @ hg19
Exon Skipping
Gene
ENSG00000160445 | ZER1
Description
zer-1 homolog (C. elegans) [Source:HGNC Symbol;Acc:30960]
Coordinates
chr9:131495705-131502398:-
Coord C1 exon
chr9:131502210-131502398
Coord A exon
chr9:131497613-131497710
Coord C2 exon
chr9:131495705-131495807
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTGATTTCTTTTCCTGCAGGTC
3' ss Score
11.12
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CAACCTGTTGGAGAGCAAGGCCGATGGGATCGAGGTTTCCTACAATGCCTGCGGCGTCCTCTCCCACATCATGTTTGATGGACCCGAGGCCTGGGGCGTCTGTGAGCCCCAGCGTGAGGAGGTGGAGGAACGCATGTGGGCTGCCATCCAGAGCTGGGACATAAACTCTCGGAGAAACATCAATTACAG
Seq A exon
GTCATTTGAACCAATTCTCCGCCTCCTTCCCCAGGGAATCTCTCCTGTCAGCCAGCACTGGGCAACCTGGGCCCTGTATAACCTCGTGTCTGTCTACC
Seq C2 exon
CGGACAAGTACTGCCCTCTGCTGATCAAAGAAGGGGGGATGCCCCTTCTGAGGGACATAATTAAGATGGCGACCGCACGGCAGGAGACCAAGGAAATGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160445-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PD(13.8=46.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGAGGAACGCATGTG
R:
CCATTTCCTTGGTCTCCTGCC
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)