DreEX6082658 @ danRer10
Exon Skipping
Gene
ENSDARG00000105123 | zer1
Description
zyg-11 related, cell cycle regulator [Source:ZFIN;Acc:ZDB-GENE-040426-2307]
Coordinates
chr21:166463-168356:+
Coord C1 exon
chr21:166463-166651
Coord A exon
chr21:168030-168127
Coord C2 exon
chr21:168254-168356
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGTC
3' ss Score
10.47
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
TGATCTGCTGGACAGTAAAGCGGACGGGATCGAGGTCTCCTATAACGCCTGCGGTGTTCTCTCACACATCATGTTTGACGGGCCGGGGGTCTGGAGTATGGAGGAGCCCAGCAGGACACACGTGATGGACAAGATGTGGACGGCCATCCAGAGCTGGGACGTGAGCTCGCGGAGGAACATCAACTACAG
Seq A exon
GTCGTTCGAGCCTATCCTGCGTCTCCTCCCTCAGAGCGGGGCTCCGGTCAGTCAGCACTGGGCCACGTGGGCGCTCTATAACCTGGTGTCTGTTTACC
Seq C2 exon
CCAGTAAATACTGCCCTCTGCTGATCAAGGAGGGCGGCGTCTCTCTGCTGCAGGCGGTGCTGGAGCTGCAGACCTCTCACGTGGAGACCAAGGACATGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105123-'13-21,'13-20,14-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACACACGTGATGGACAA
R:
CATGTCCTTGGTCTCCACGTG
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]