BtaEX6046569 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99493557-99495317:+
Coord C1 exon
chr11:99493557-99493685
Coord A exon
chr11:99493987-99494126
Coord C2 exon
chr11:99495211-99495317
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTTCCATTTGGCACCCTAGCGA
3' ss Score
3.83
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TCACACCCCCAGCCTGCAGTCTCTCTGCATCTGCAGCCTGGCCTACACGGAAGCAGGACAGACAGTAATCAATATCATGGGCATCGGTGTGGACACCATCGACATGGTCATGGCTGCTCAGCCCCGCAG
Seq A exon
CGATGGGGCAGAGGGCCAGGGCCAGGGCCAGCTGCTGATCAAGACAGTGAAGTTGGCGTTCTCTGTCACCAACAATGTCATTCGGCTGAAACCGCCTTCTAATGTGGTGTCCCCTCTGGAACAGGCTCTCACACAGCATG
Seq C2 exon
GTGCCCATGGGAACAACCTTATTGCTGTTCTTGCCAAATACATCTACCACAAACACGACCCAGCTCTGCCTCGTCTTGCTATCCAGCTGCTGAAACGTCTGGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.7=100),PF118943=DUF3414=FE(8.6=100)
A:
PF104874=Nup188=FE(5.1=100),PF118943=DUF3414=FE(9.4=100)
C2:
PF104874=Nup188=FE(3.8=100),PF118943=DUF3414=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCCTGCAGTCTCTCT
R:
GTGGCCAGACGTTTCAGCAG
Band lengths:
228-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]