RnoEX0061649 @ rn6
Exon Skipping
Gene
ENSRNOG00000025185 | Nup188
Description
nucleoporin 188 [Source:RGD Symbol;Acc:1306022]
Coordinates
chr3:8891538-8895065:+
Coord C1 exon
chr3:8891538-8891666
Coord A exon
chr3:8892492-8892631
Coord C2 exon
chr3:8894959-8895065
Length
140 bp
Sequences
Splice sites
3' ss Seq
GATCTCCATTTGGCACCTAGTGA
3' ss Score
3.24
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CCACACGCCCAGCCTGCCTTCCCTCTGCATCTGCAGCCTGGCTTATACCGAGGCTGGACAGACTGTCATCAGCATCATGGGAATTGGTGTGGACACCATAGACATGGTGATGGCTGCTCAGCCCCGCAG
Seq A exon
TGATGGGCCAGAAGGTCAGGGCCAGGGCCAACTGCTGATCAAGACAGTGAAGCTGGCGTTCTCTGTCACCAACAATGTTATTCGGCTGAAGCCTCCTTCTAATGTGGTGTCCCCCCTGGAACAGGCTCTCACACAGCATG
Seq C2 exon
GTGCCCATGGGAACAACCTTATTGCTGTCCTAGCCAAGTACATCTACCACAGACATGACCCAGCTTTGCCACGCCTGGCCATCCAGCTGCTGAAACGTTTGGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025185_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(5.9=100),PF118943=DUF3414=FE(8.6=100)
A:
PF104874=Nup188=FE(6.4=100),PF118943=DUF3414=FE(9.4=100)
C2:
PF104874=Nup188=FE(4.8=100),PF118943=DUF3414=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTGCCTTCCCTCT
R:
GTGGCCAAACGTTTCAGCAG
Band lengths:
227-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]