DreEX6082863 @ danRer10
Exon Skipping
Gene
ENSDARG00000030022 | nup188
Description
nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
Coordinates
chr21:4411246-4413644:+
Coord C1 exon
chr21:4411246-4411371
Coord A exon
chr21:4411703-4411836
Coord C2 exon
chr21:4413538-4413644
Length
134 bp
Sequences
Splice sites
3' ss Seq
GAATTTGTGTCTGTCTGCAGTGG
3' ss Score
7.99
5' ss Seq
ACGGTTAGT
5' ss Score
7.37
Exon sequences
Seq C1 exon
TGCCCCGAGTCTGCAGTCGTTGTGTATCTACAGTCTGGCCAACACTGAGGCAGGACAGGCAGTGGTCAACATCATGGGTGTTGGAGTGGACACTATTAACATGGTGCTCGCAGCTCAGCCCAGCAG
Seq A exon
TGGTGGTTCTGAAGGACCTGGTCAAGTTCTGATCCAGACAGTGAAACTGGCGTTTTCAGTCACTAACAATGTGATCCGACTCAAGCCTCAGTCTGATACGGCTTCACCTCTGGAGCAGGCTTTAACTCAGCACG
Seq C2 exon
GGGGTCATGGAAATAACCTGATTGCTGTGCTGGCGAAGTATATTTATCATAAACACGACCCAGCGCTGCCTCGACTGGCCATACAGCTGCTGAAGAGACTCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030022-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.6=100)
A:
PF104874=Nup188=FE(4.9=100)
C2:
PF104874=Nup188=FE(3.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCTGCAGTCGTTGTGTA
R:
GTGGCGAGTCTCTTCAGCAG
Band lengths:
227-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]