GgaEX1040867 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5417173-5418812:+
Coord C1 exon
chr17:5417173-5417301
Coord A exon
chr17:5418241-5418374
Coord C2 exon
chr17:5418706-5418812
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTTGACACACAGTGA
3' ss Score
6.13
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CAATGCCCCCAGCCTTCAGTCCTTGTGCATCTTCAGCCTGGCCAACACTGAAGCAGGGCAAGCTGTCATTAACATCATGGGAATCGGTGTTGACACTATTGACATGGTAATGGCCTCCCAGTCGAGTAG
Seq A exon
TGATGAGTCGCAAGGCCAAGGCCAGCTGCTGATACAAACTGTGAAGCTGGCGTTCTCAGTCACCAATAATGTCATACGATTGAAACCCCCCTCTAGTGTGGTATCTCCACTAGAACAGGCACTTACTCAGCATG
Seq C2 exon
GTGCTCATGGAAACAATCTTATTGCGGTCTTGGCCAAATACATCTACCACAAGCATGACCCTGCACTCCCACGCCTGGCCATCCAGCTGCTCAAGAGACTGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.7=100)
A:
PF104874=Nup188=FE(4.9=100)
C2:
PF104874=Nup188=FE(3.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCCCCAGCCTTCAG
R:
TAGCCAGTCTCTTGAGCAGCT
Band lengths:
234-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]