BtaEX6046589 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99469025-99473307:+
Coord C1 exon
chr11:99469025-99469079
Coord A exon
chr11:99470410-99470483
Coord C2 exon
chr11:99473223-99473307
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTTTTTTTCCCAGAAT
3' ss Score
9.76
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGCAGTAGAGAACTGTGGACAATTCTGCTAGGAAGGTCAGCTCTGAGAGAACTG
Seq A exon
AATCAGATTGAGGCAGAGCTGAATAAACATTGGCAGCGGCTGTTAGAAGGACTTTCTTACTATAAACCTCCCAG
Seq C2 exon
TCCAAGTTCAGCTGAAAAAGTGAAAGCTAGTAAAGATGTAGCTTCACCACTGAAGGAACTGGGTTTAAGAATCAGCAAGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613-'2-4,'2-1,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(10.2=100),PF104874=Nup188=PU(1.2=10.5)
A:
PF118943=DUF3414=FE(13.6=100),PF104874=Nup188=FE(13.9=100)
C2:
PF118943=DUF3414=FE(15.8=100),PF104874=Nup188=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGAACTGTGGACAATTCTGCT
R:
CAAAAACTTGCTGATTCTTAAACCCA
Band lengths:
135-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]