GgaEX6015150 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5406200-5407592:+
Coord C1 exon
chr17:5406200-5406254
Coord A exon
chr17:5406838-5406911
Coord C2 exon
chr17:5407508-5407592
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTATTTGGTTCTTTTTTTAGGCA
3' ss Score
9.78
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAGCAGCAGAGAATTGTGGACAATTCTCCTGGGCAGATCAGCTTTAAGAGAACCA
Seq A exon
GCACAGATTGCATCAGAACTGAACAAGCACTGGCAGAGATTGTTAGAAGGGCTTTCATACTACAAACCTCCAAG
Seq C2 exon
TACAACTTCAGCAGAGAAGATAAAAGCTGACAAAGATGTAGCTGCTCCACTAAAAGAGTTGGGTCTGAGGGTCAGCAAGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548-'9-3,'9-2,11-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF104874=Nup188=PU(0.2=10.5)
A:
PF104874=Nup188=FE(2.6=100)
C2:
PF104874=Nup188=FE(3.1=100)
Main Skipping Isoform:
ENSGALT00000039668fB661
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAGAGAATTGTGGACA
R:
TGACCCTCAGACCCAACTCTT
Band lengths:
128-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]