MmuEX0032713 @ mm10
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30296648-30300884:+
Coord C1 exon
chr2:30296648-30296702
Coord A exon
chr2:30298416-30298489
Coord C2 exon
chr2:30300800-30300884
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATTGCCTTCTTCTTTTGCAGAAT
3' ss Score
12.13
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGCAGTAGAGAACTCTGGACAATTCTACTTGGGAGGTCAGCTCTTAGAGAATTG
Seq A exon
AATCAGATTGAGGCGGAACTGAATAAATATTGGCAGCGGTTGTTAGAAGGGCTTTCTTACTACAAACCTCCCAG
Seq C2 exon
TCCAAGTTCAGCTGAAAGAGTGAAAGCTAATAAAGACGTAGCGTCACCTCTGAAGGAGCTGGGCCTAAGAGTCAGCAAGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.218
Domain overlap (PFAM):
C1:
PF104874=Nup188=PU(0.2=10.5)
A:
PF104874=Nup188=FE(23.5=100)
C2:
PF104874=Nup188=FE(27.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGTAGAGAACTCTGGACA
R:
ACTTGCTGACTCTTAGGCCCA
Band lengths:
135-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types