DreEX0052166 @ danRer10
Exon Skipping
Gene
ENSDARG00000030022 | nup188
Description
nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
Coordinates
chr21:4376535-4380825:+
Coord C1 exon
chr21:4376535-4376589
Coord A exon
chr21:4377749-4377822
Coord C2 exon
chr21:4380741-4380825
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATTCTGGTAATATCTTGCAGGCC
3' ss Score
7.13
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGCAGCCGGGAGTTATGGTCAATCTTGCTGGGAAGATCTGCACTGCGAGAACCG
Seq A exon
GCCCAAATTGAGGATGAGTTGAATCGGAACTGGGAGAGACTTTTACAGGGTCTGTCCTTCTACAAACAACCCAG
Seq C2 exon
CACATCGGCAGCAGACAAGCTGAAAGCAGATAAAGACACACCACAGGCTCTCAAAGACTTTGGGCTCAGGATCAGCAAACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030022_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF104874=Nup188=PU(0.2=10.5)
A:
PF104874=Nup188=FE(2.6=100)
C2:
PF104874=Nup188=FE(3.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCGGGAGTTATGGTCAA
R:
GAGTTTGCTGATCCTGAGCCC
Band lengths:
135-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]